species:   Fuoxy
pid:       PID2279
parent:    Fol-milR1
paralog:   
locus:     CM000601.1:1478120-1478228
matures:   ['UGGAUGAAUCAAGCGUGGUAUGAU', 'CGUAUCAUGCGUGAUUCAUCCAUC']
srr:       SRR14311540
genome:    /Users/jax/+Genomes/Fungal_genomes/Fuoxy.GCA_000149955.1_ASM14995v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Ji2021-nq.SRR14311540.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Ji2021-nq.SRR14311540.cram CM000601.1:1478120-1478228

3 out of bounds
1921 alignments
1921 proper strand
1594 stranded perfect matches

          *************************                                       *************************          
UACCUUUAUAUCGUAUCAUGCGUGAUUCAUCCAUCGCAAGGCGACAUAACCACCCUUUGUUCCUGGCGCAUAGCGAUGGAUGAAUCAAGCGUGGUAUGAUGUAAAGGUU
.((((((((((((((((((((.(((((((((((((((...(((.((.(((........)))..)).)))...))))))))))))))).)))))))))))))))))))).
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAU--------- l=24 a=13 c
-----------CGUAUCAUGCGUGAUUCAUCCAUC-------------------------------------------------------------------------- l=24 a=0 c*
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=1167 ma
------------GUAUCAUGCGUGAUUCAUCCAUC-------------------------------------------------------------------------- l=23 a=0 ma*

--------------------------------------------------------------------------------UGAAUCAAGCGUGGUAUGAUG-------- l=21 a=2 
-----------------------------------------------------------------------------GGAUGAAUCAAGCGUGGUAUGA---------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGG--------------- l=18 a=2 
----------------------------------------------------------------------------UGGAUGAgUCAAGCGUGG--------------- l=18 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGc--------------- l=18 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGU-------------- l=19 a=13 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGaU-------------- l=19 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGc-------------- l=19 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGa-------------- l=19 a=2 
----------------------------------------------------------------------------cGGAUGAAUCAAGCGUGGU-------------- l=19 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUA------------- l=20 a=85 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUg------------- l=20 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUu------------- l=20 a=1 
----------------------------------------------------------------------------UGGAUGuAUCAAGCGUGGUA------------- l=20 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAU------------ l=21 a=44 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAa------------ l=21 a=5 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAg------------ l=21 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAgGCGUGGUAU------------ l=21 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAc------------ l=21 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGcGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUG----------- l=22 a=267 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUa----------- l=22 a=59 
----------------------------------------------------------------------------UGGAUGAgUCAAGCGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAcG----------- l=22 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGcAUG----------- l=22 a=2 
----------------------------------------------------------------------------UGGAUGAAUCAgGCGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUu----------- l=22 a=3 
----------------------------------------------------------------------------UGGAUGAAcCAAGCGUGGUAUG----------- l=22 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAGCaUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGaUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGgUGAAUCAAGCGUGGUAUG----------- l=22 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=1167 (ma)
----------------------------------------------------------------------------UGGAUaAAUCAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUaA---------- l=23 a=29 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGu---------- l=23 a=12 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGg---------- l=23 a=24 
----------------------------------------------------------------------------UGGAUGAAUCAgGCGUGGUAUGA---------- l=23 a=4 
----------------------------------------------------------------------------UGGAUGAAcCAAGCGUGGUAUGA---------- l=23 a=4 
----------------------------------------------------------------------------UGGAUGgAUCAAGCGUGGUAUGA---------- l=23 a=6 
----------------------------------------------------------------------------UGGAUGAAUCcAGCGUGGUAUGA---------- l=23 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGcAUGA---------- l=23 a=4 
----------------------------------------------------------------------------UGGgUGAAUCAAGCGUGGUAUGA---------- l=23 a=4 
----------------------------------------------------------------------------UGGAUGAgUCAAGCGUGGUAUGA---------- l=23 a=5 
----------------------------------------------------------------------------UGGAUGAAUuAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCgAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGc---------- l=23 a=19 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGcGGUAUGA---------- l=23 a=4 
----------------------------------------------------------------------------UGGAUGAAUCAAGCaUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------aGGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=4 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGaUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGgGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGaAUGAAUCAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAgGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGuAUCAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------cGGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUgUGA---------- l=23 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAGuGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGaGUGGUAUGA---------- l=23 a=3 
----------------------------------------------------------------------------UaGAUGAAUCAAGCGUGGUAUGA---------- l=23 a=3 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGuUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAcGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAcGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCuAGCGUGGUAUGA---------- l=23 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAa--------- l=24 a=71 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAU--------- l=24 a=13 (c)
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAc--------- l=24 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAUa-------- l=25 a=1 
----------------------------------------------------------------------------UGGAUGAAUCAAGCGUGGUAUGAUu-------- l=25 a=3 
---------------------------------------------------------------------------cUGGAUGAAUCAAGCGUGGUAUGA---------- l=24 a=7 

mb-01011
ax-1011111
ku-11
ss-111111111110
fn-111
